VP Electricity - trust me if you guys were on the East coast, or I on the West, I would've come to you no question. The shop that installed the system says that they cannot hear the whine I am describing. Hopefully I'll get some time tomorrow to drop the gain levels and re calibrate the cross overs and tune the car (MS-8) and see if that eliminates the RPM noise. As far as the turn on, thanks for the input! I think I'll shoot the shop that did the work to my car an email with the post you just sent to see about changing the way the system turns on.
Thanks for your input, open a shop on the East coast!