Ok I put in the new board that Terry sent me, surprisingly did not get an warning lights when I first started the car. Put meth in..damn. Car feels smoother than before. And my cold starts are fine again *knock on wood*.
I'm going to assume something affected the board when I fried the DME almost 6-7 months ago but now the car is happy. Put in new meth lines and put the meth lines over the cowl now as well.