I've talked to a few E93 owner and they never had this problem on the vehicle. I took it in for a clunking noise on driver side turn out to be a latch problem, they did a minor tweak on the roof and this problem pops up and never going away. The weird thing is squeaky & clunking noise came in at night but not during the day.
I had this problem when the car is not even at 1K miles.
13 E93 M3 Melbourne Red DCT/Premium/EDC/NAV/220M wheel
12 E93 Space Gray ( Retired BMW buy back )
09 E82 Space Gray/Black int/Steps/Sport/Nav/Premium/Xenon/Phone Int/Hifi/269 wheel
2006 E90 ( sold )
My next vehicle would be a Zamboni