Dude, totally ran into the same thing when I was installing some mods on my car. Long/short, the car was stuck in the garage for 2 weeks due to the terrible snow storms we had so couldn't drive it, couldn't get a full charge on the batt, did a lot of starting, running for a couple min and then shutdown. It was just the battery getting low, and the car is "smart" enough to conserve energy for starting. Once I got a full charge on the batt the AEs come on everytime. If the switch is in the right position (auto or on) then maybe have the battery checked - usually places like Discount Auto parts will check your batt for free. Hope this helps.
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